Parallelizing the Edlib sequencing library using MCE and OpenMP in Perl
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Updated
Jun 21, 2024 - Perl
Parallelizing the Edlib sequencing library using MCE and OpenMP in Perl
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
habenulaPilot project code repository
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Visual self-service analytics platform for big omics data.
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
A web app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
This repository contains materials I put together for Champagne/Curley lab meeting on 06/25/2020: Primer for tag-based RNA seq
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
This repository contains the python package for Helical
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
Next-Gen Sequencing tools from the Horvath Lab
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
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