Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

✂️ Trim sequencing adapters from NGS data automatically

Dockerized cutadapt

Metabarcoding analysis pipeline, using DADA2 and qiime2

This repository contains the code pipeline I developed for Next Generation Sequencing (NGS) analysis during my internship at CSIR-IGIB, New Delhi. The project was completed under the guidance of Mr. Sunil Nagpal and Dr. Bhupesh Taneja. For detailed instructions and a better understanding of pipeline, please refer to the README.md file.

Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).