A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.
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Updated
Jun 27, 2023 - R
A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.
RNA-seq workflow: gene-level exploratory analysis and differential expression.
R scripts for human and marine data analysis
TCM: visualizes trajectories and cell populations from single cell data
Refining and extending mRNA3' ends
An optimal experimental design framework for accelerating knowledge discovery using gene expression data
Example of how to apply machine learning (ML) approaches in building a predictive model. RNA-seq data set used to train and evaluate the performance of different ML models.
Transcriptome Analysis performed for the Roy et.al PNAS 2018 Paper
Cross-species RNA-Seq differential expression comparison with 2D pathway enrichment—rank-based MONOVA test.
Basic script for RNA-seq analysis with DESeq2
Data and code used in the Plant Genomes dashboard
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
RNA-seq analysis for zebrafish with muscle injury
Identify Differential Expressed Genes in DgcA null mutant and Knock-out samples in Dictyostelium discoideum. The same workflow has been used for the differential expression analysis of Polysphondylium pallidum.
Introductory RNA-seq course for LCG-UNAM Feb 2022 (in Spanish)
Introductory RNA-seq course for LCG-UNAM Feb 2023 (in Spanish)
Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs
Analysis scripts for the manuscript: "Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy".
Pipelines/Wrappers for evaluating the performance of variant callers on tumor/normal RNA-Seq data
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