Toolbox for molecular animations in Blender, powered by Geometry Nodes.
-
Updated
Aug 11, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Standardized data set for machine learning of protein structure
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
A Python API for the RCSB Protein Data Bank (PDB)
MoleculeKit: Your favorite molecule manipulation kit
A PyTorch framework for prediction of tertiary protein structure
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Official repo of the modular BioExcel version of HADDOCK
Open source biolab
A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)
Contextualizing protein representations using deep learning on protein networks and single-cell data
Official repository for discrete Walk-Jump Sampling (dWJS)
Multi-Scale Representation Learning on Proteins (NeurIPS 2021)
Inference code for PoET: A generative model of protein families as sequences-of-sequences
The Enhanced Database of Interacting Protein Structures for Interface Prediction
A Python package to calculate, visualize and analyze correlation maps of proteins.
Add a description, image, and links to the proteins topic page so that developers can more easily learn about it.
To associate your repository with the proteins topic, visit your repo's landing page and select "manage topics."