Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).
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Updated
Aug 1, 2024 - R
Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).
An analysis and visualization platform for 'omics data
Topological data analysis for Comparative Genomics
Pangenome Mutation-Annotated Networks
AMR/VF LGT focused bacterial genomics analysis workflow
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Library to parse, edit and handle in memory GFA graphs
Analysis of shared parts of a pangenome
generating hardware accelerators for pangenomic graph queries
Scripts for Hill et al. (in review) 🌾
Pangenomics Workshop Overview
Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
Pangenome Analysis in Prokaryotes Lesson
Introduction to Python: Pangenomics
Introduction to the Command Line for Pangenomics
Optimal sequence-to-graph alignment with recombinations
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