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@at-cg

ATCG

Algorithmic Techniques for Computational Genomics

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  1. PanAligner PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    C 35 4

  2. minichain minichain Public

    Long-read aligner to pangenome graphs

    C 25 3

  3. RAFT RAFT Public

    C++ 17 1

  4. ChainX ChainX Public

    Anchor chaining method for nucleotide sequences

    C++ 8 2

  5. containX containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    C++ 5 1

  6. VF VF Public

    Variant selection framework in genome graphs

    C++ 4

Repositories

Showing 9 of 9 repositories
  • at-cg.github.io Public

    PI/Lab website

    at-cg/at-cg.github.io’s past year of commit activity
    SCSS 1 MIT 1 0 0 Updated Jul 22, 2024
  • minichain Public

    Long-read aligner to pangenome graphs

    at-cg/minichain’s past year of commit activity
    C 25 3 1 0 Updated May 20, 2024
  • RAFT Public
    at-cg/RAFT’s past year of commit activity
    C++ 17 1 2 0 Updated Apr 5, 2024
  • CGProb Public

    Counting coverage gaps

    at-cg/CGProb’s past year of commit activity
    C++ 3 1 0 0 Updated Mar 14, 2024
  • PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    at-cg/PanAligner’s past year of commit activity
    C 35 4 0 0 Updated Dec 20, 2023
  • containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    at-cg/containX’s past year of commit activity
    C++ 5 1 0 0 Updated Apr 5, 2023
  • MMC Public

    Minimizer counting and analysis

    at-cg/MMC’s past year of commit activity
    C++ 1 1 0 0 Updated Oct 7, 2022
  • ChainX Public

    Anchor chaining method for nucleotide sequences

    at-cg/ChainX’s past year of commit activity
    C++ 8 Apache-2.0 2 1 0 Updated Mar 22, 2022
  • VF Public

    Variant selection framework in genome graphs

    at-cg/VF’s past year of commit activity
    C++ 4 MIT 0 0 0 Updated Oct 14, 2021

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