Misc. Nextflow scripts
-
Updated
May 29, 2019 - Nextflow
Misc. Nextflow scripts
This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.
Paired Sequence Assembler using Flowcraft/Nextflow/Deploit
PathoPore - Longer Sequences and NextFlow Faster Analysis
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Simulation of false tandem substitutions from input sequencing data
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Nextflow Wrapper for Mykrobe
A DEEP LEARNING APPROACH TO PREDICTING POTENTIAL VIRUS SPECIES CROSSOVER USING CONVOLUTIONAL NEURAL NETWORKS AND VIRAL PROTEIN SEQUENCE PATTERNS
nf-pipeline template for custom data analysis, renders report
Python library to execute batches of jobs using nextflow.
How to channel sequencing reads from multiple subdirectories into nextflow pipeline
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics
Nextflow pipeline for analysis of direct RNA Nanopore reads
A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
Add a description, image, and links to the nextflow-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the nextflow-pipeline topic, visit your repo's landing page and select "manage topics."