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  1. plasmidID plasmidID Public

    PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

    Shell 37 8

  2. iskylims iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 72 35

  3. buisciii-tools buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 1 12

  4. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 5

  5. BU-ISCIII BU-ISCIII Public

    Our Wiki and main public documentation repository.

    2 8

Repositories

Showing 10 of 66 repositories
  • BU-ISCIII Public

    Our Wiki and main public documentation repository.

    BU-ISCIII/BU-ISCIII’s past year of commit activity
    2 8 2 0 Updated Oct 31, 2024
  • bacterial_wgs_training Public

    In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

    BU-ISCIII/bacterial_wgs_training’s past year of commit activity
    HTML 2 GPL-3.0 0 1 0 Updated Oct 31, 2024
  • buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    BU-ISCIII/buisciii-tools’s past year of commit activity
    Python 1 GPL-3.0 12 15 0 Updated Oct 29, 2024
  • relecov-tools Public

    set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

    BU-ISCIII/relecov-tools’s past year of commit activity
    Python 5 GPL-3.0 21 18 3 Updated Oct 29, 2024
  • BU-ISCIII/relecov-platform’s past year of commit activity
    Python 1 GPL-3.0 5 5 0 Updated Oct 29, 2024
  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    BU-ISCIII/viralrecon’s past year of commit activity
    Nextflow 0 MIT 111 0 0 Updated Oct 25, 2024
  • iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    BU-ISCIII/iskylims’s past year of commit activity
    Python 72 GPL-3.0 35 34 4 Updated Oct 15, 2024
  • introduction_to_bioinformatics Public

    In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

    BU-ISCIII/introduction_to_bioinformatics’s past year of commit activity
    3 GPL-3.0 3 0 0 Updated Jun 21, 2024
  • buisciii.github.io Public Forked from kitian616/jekyll-TeXt-theme

    BU-ISCIII team website

    BU-ISCIII/buisciii.github.io’s past year of commit activity
    SCSS 0 MIT 2,572 0 0 Updated May 20, 2024
  • taranis Public

    cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

    BU-ISCIII/taranis’s past year of commit activity
    Python 7 GPL-3.0 4 0 0 Updated May 2, 2024