Brain Modeling Toolkit
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Updated
Jun 16, 2024 - Python
Brain Modeling Toolkit
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
Database for experimental neuroscience laboratories
PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym
Tools for creating full TVB models from individual anatomical scans
Research data management in biomedical and machine learning applications
Numerical solver for coupled population density equations
Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
A toolkit for detecting and tracking crabs in the field.
In order to accelerate progress in cohort studies, we proposed a hierarchical neuroscience knowledge base consisting of projects/organizations, multi-modal databases and toolkits, and take the information object in Frontiers in Neuroscience as a example input. Meanwhile, we developed and open sourced the query tool, PDT_fninf , so that researche…
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Generalized Correspondence LDA (Python implementation). Deprecated in favor of NiMARE.
Python GUI to Map fMRI ICA probability/t-value maps to known networks (e.g. resting state networks).
A package to export events using log files from presentation software.
This project focus on sleep spindles searching in filtered EEG signal.
Deep-Learning Based Automated Neuron Reconstruction from 3D Microscopy Images Using Synthetic Training Images
Ontologized versions of the ABA structureGraphs - with mappings to Uberon
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