ChIP-seq peak-calling, QC and differential analysis pipeline.

ATAC-seq processing pipeline

ChIP-seq analysis pipeline

Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

Benchmarking ChIP-seq peak callers

DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

docker file for genomic tools

Sequencing data preprocessing

This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.

Peak calling optimization via real time results assessment and interactive parameter adjustment.

Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

Dockerized MACS2

First ever Python Project: Allinging the highest points of MACS2 peaks with positions around gene starts from a gff file.

Snakemake workflow used to call peaks with Macs2

A pipeline to call intron and intergenic eRNAs from PRO-seq Data

CCBR pipeline for preliminary QC and peak calling from ATACseq datasets 🌲