chromatin
Here are 47 public repositories matching this topic...
A cool place to store your Hi-C
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Aug 12, 2024 - Python
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
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Jul 30, 2024 - Python
CUT&RUN and CUT&Tag data processing and analysis
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Feb 18, 2023 - Shell
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
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Aug 3, 2023 - Shell
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
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Jul 8, 2024 - Python
dcHiC: Differential compartment analysis for Hi-C datasets
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Jan 10, 2024 - R
Chromosome polymer simulations and in silico capture experiments
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Dec 5, 2023 - Python
Methods for summarizing and visualizing multi-biosample functional genomic annotations
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Aug 31, 2023 - Python
A Python implementation for BH-FDR and HiCCUPS
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Aug 14, 2023 - Python
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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Aug 4, 2022 - Python
3D Genome Browser
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Jan 22, 2022 - JavaScript
Comparison of Hi-C Experiments using Structural Similarity.
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Jul 18, 2023 - Python
Pipeline for Universal Mapping of ATAC-seq
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Apr 30, 2024 - Nextflow
Super-resolution chromatin tracing 2018
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Nov 7, 2020 - Jupyter Notebook
Scripts to create cartoons of 3D genomes
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Feb 27, 2024 - Python
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
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Nov 12, 2020 - R
Processing, quality control and analysis of GAM datsets
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Jun 13, 2023 - Python
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
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Jul 24, 2024 - Perl
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