Command-line program that scans NMDC database for referential integrity violations
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Updated
Jul 20, 2024 - Python
Command-line program that scans NMDC database for referential integrity violations
LLM-based ontological extraction tools, including SPIRES
Simple Standard for Sharing Ontology Mappings
National Microbiome Data Collaborative (NMDC) unified data model
Linked Open Data Modeling Language
Data ingest application for Monarch Initiative knowledge graph using Koza
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
Schema repository for the Alliance of Genome Resources persistent data store
Schema and generated objects for biolink data model and upper ontology
SQL and SQLite builds of OWL ontologies
Runtime support for linkml generated models
wrapper for multiple linkml storage engines (alpha software)
Python toolkit for SSSOM mapping format
EXPERIMENTAL rendering of phenopackets in linkml
Generated documentation for SAVED data model. Due to the interaction between LinkML, JSON-LD contexts and yet-to-be-generated RDF (turtle/n-triples), this is manually compiled.
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