LLM-based ontological extraction tools, including SPIRES

Linked Open Data Modeling Language

Schema and generated objects for biolink data model and upper ontology

Simple Standard for Sharing Ontology Mappings

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…

Python toolkit for SSSOM mapping format

Data transformation framework for LinkML data models

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

SQL and SQLite builds of OWL ontologies

Automated assistance for the schema development lifecycle

Link Modeling Language (LinkML) model

National Microbiome Data Collaborative (NMDC) unified data model

A knowledge extraction tool that uses a large language model to extract semantic information from text

Runtime support for linkml generated models

Mapping between LinkML schemas

CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)

Tools for working with KGCL

Data ingest application for Monarch Initiative knowledge graph using Koza

Schema for chemistry ontology classes

wrapper for multiple linkml storage engines