saeyslab / nichenetr Star 454 Code Issues Pull requests NicheNet: predict active ligand-target links between interacting cells rna-seq gene-expression network-inference data-integration single-cell-rna-seq single-cell-omics intercellular-communication ligand-receptor ligand-target cell-cell-communication Updated May 30, 2024 R
saezlab / liana Star 160 Code Issues Pull requests LIANA: a LIgand-receptor ANalysis frAmework ligand-receptor cell-cell-communication omnipath cellphonedb cellchat liana Updated Feb 28, 2024 R
ZJUFanLab / CellTalkDB Star 25 Code Issues Pull requests A manually curated database of literature-supported ligand-receptor interactions in human and mouse rna-seq database toolkit data-analysis single-cell ligand-receptor cell-cell-interaction cell-cell-communication Updated Jul 1, 2024 R
stevexniu / scMatchmaker Star 7 Code Issues Pull requests Cell-Cell Interaction Discovery in Single Cell RNA Sequencing rna-seq rstats single-cell ligand-receptor Updated May 16, 2022 R
VCCRI / scTalk Star 6 Code Issues Pull requests Intercellular communication analysis for scRNA-seq data scrna-seq scrna-seq-analysis intercellular-communication ligand-receptor Updated May 31, 2021 R
chiblyaa / LigandReceptor Star 1 Code Issues Pull requests Ligand-Receptor Analysis for scRNAseq data scrnaseq ligand-receptor Updated Dec 31, 2020 R