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1. nichenetr nichenetr Public

   NicheNet: predict active ligand-target links between interacting cells

   R 492 117

2. FlowSOM FlowSOM Public

   Using self-organizing maps for visualization and interpretation of cytometry data

   R 25 8

3. multinichenetr multinichenetr Public

   MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

   HTML 125 14

4. PeacoQC PeacoQC Public

   Peak-based selection of high quality cytometry data

   R 15 8

5. spotless-benchmark spotless-benchmark Public

   A repository for benchmarking spatial deconvolution and mapping tools

   R 28 2

6. CytoNorm CytoNorm Public

   R library to normalize cytometry data

   R 33 7