DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
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Updated
Mar 9, 2024 - Python
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Quickly search, compare, and analyze genomic and metagenomic data sets.
De novo genome assembly and multisample variant calling
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Predict plasmids from uncorrected long read data
k-mer similarity analysis pipeline
FOCUS: An Agile Profiler for Metagenomic Data
Generate unique KMERs for every contig in a FASTA file
Fast k-mer based tool for multi locus sequence typing (MLST)
A versatile toolkit for k-mers with taxonomic information
Count kmers with a more efficient (faster) hash table
modular k-mer count matrix and Bloom filter construction for large read collections
K-mer counting algorithms and count-data utilities for the BioJulia framework
Bioinformatics 101 tool for counting unique k-length substrings in DNA
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
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