andrewjpage / tiptoft Star 38 Code Issues Pull requests Predict plasmids from uncorrected long read data bioinformatics research nanopore genomics pathogen bioinformatics-pipeline pacbio global-health kmer oxford-nanopore plasmid infectious-diseases long-reads uncorrected plasmidfinder Updated Dec 5, 2019 Python
IbrahimElzahaby / Erasmus_MC_Internship Star 1 Code Issues Pull requests Plasmidome analysis to track the transfer route of AMR genes in bacteria fasta-sequences rgi antimicrobial-resistance-genes prokka plasmidfinder abricate virulence-genes antimicrobial-genes-annotation amr-detection refseq-genbank panaroo Updated Oct 15, 2023 Jupyter Notebook