A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
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Updated
Jun 26, 2023 - Java
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
A standalone interactive application for detecting biological significance on a set of genes
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
Overrepresentation analysis for KEGG and PID pathways using community detection
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Library for KEGG pathway enrichment analysis
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
An HTML parser for "KEGG Mapper – Reconstruct Result" pages
This project interests in searching hidden loops, the cross-map loops, on KEGG database.
Computational protemics analysis of cancer cell-lines at the level of single-cells
A .NET wrapper for the Kyoto Encyclopedia of Genes and Genomes (KEGG) API.
A Python script for efficiently retrieving and organizing module-related data from the KEGG database, including entries, symbols, pathway IDs, and names.
"Pathway_Feature_Identification.py" is a script for analyzing microbial genomic data, identifying antimicrobial resistance-associated pathways using KEGG data, and applying logistic regression for feature selection.
metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.
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