GSEA-MSigDB / GSEA2.jl Star 22 Code Issues Pull requests Julia implementation of the next generation GSEA 🏔️ cli bioinformatics gene julia computational-biology rna command-line-tool single-cell gene-set-enrichment msigdb command-line-interface gsea gene-set-analysis gene-set Updated Aug 26, 2024 Julia
genescf / GeneSCF Star 21 Code Issues Pull requests Gene Set Clustering based on Functional annotation gene real-time cancer up-to-date gene-set-enrichment kegg-pathway enrichment-analysis geneontology gsea gene-set-clustering reactome-pathway functional-enrichment-analysis gene-set-analysis enrichment-testing download-pathways download-ontology functional-enrichment Updated May 3, 2024 Perl
matteocereda / GSECA Star 5 Code Issues Pull requests Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data gene-sets big-data tcga rna-sequencing pancancer gsea fmm cohorts big-data-analytics finite-mixture variance-analysis handiling-heteogeneity gene-set-analysis data-discretization Updated Aug 13, 2020 R
markziemann / cistro_gmt Star 1 Code Issues Pull requests enabling pathway analysis of curated chip-seq data gene-sets gene-regulation chip-seq gene-set-analysis Updated Jul 10, 2020 Shell
markziemann / dee2_gene_signatures Star 0 Code Issues Pull requests A resource of gene expression signatures derived from the DEE2 dataset (https://dee2.io) data-mining gene-sets genomics gene-regulation gene-set-analysis Updated Oct 19, 2020 R
NicolasH2 / gseaCondenser Star 0 Code Issues Pull requests condense GSEA terms gene-set-enrichment gsea gene-set-clustering gene-set-analysis gene-set Updated Jan 22, 2024 R