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PhDing
💫
PhDing
41 followers · 33 following
  • University of Minho
  • Portugal

Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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iquasere/README.md

Hi there! 👋

I am a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1796 commits        █████████░░░░░░░░░░░░░░░░   37.53 % 
🌆 Daytime                2067 commits        ███████████░░░░░░░░░░░░░░   43.19 % 
🌃 Evening                758 commits         ████░░░░░░░░░░░░░░░░░░░░░   15.84 % 
🌙 Night                  165 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   03.45 %

📅 I'm Most Productive on Wednesday

Monday                   853 commits         ████░░░░░░░░░░░░░░░░░░░░░   17.82 % 
Tuesday                  863 commits         █████░░░░░░░░░░░░░░░░░░░░   18.03 % 
Wednesday                1436 commits        ████████░░░░░░░░░░░░░░░░░   30.00 % 
Thursday                 689 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.40 % 
Friday                   515 commits         ███░░░░░░░░░░░░░░░░░░░░░░   10.76 % 
Saturday                 38 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.79 % 
Sunday                   392 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   08.19 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
Python                   38 mins             ██████████████░░░░░░░░░░░   56.06 % 
XML                      11 mins             ████░░░░░░░░░░░░░░░░░░░░░   17.00 % 
Text                     11 mins             ████░░░░░░░░░░░░░░░░░░░░░   16.07 % 
GitIgnore file           5 mins              ██░░░░░░░░░░░░░░░░░░░░░░░   08.29 % 
HTML                     1 min               █░░░░░░░░░░░░░░░░░░░░░░░░   02.37 % 

🐱‍💻 Projects: 
mojave_desert_mt         41 mins             ███████████████░░░░░░░░░░   59.37 % 
UPIMAPI                  14 mins             █████░░░░░░░░░░░░░░░░░░░░   20.62 % 
mojave_desert            12 mins             ████░░░░░░░░░░░░░░░░░░░░░   17.63 % 
reCOGnizer               1 min               █░░░░░░░░░░░░░░░░░░░░░░░░   02.39 %

I Mostly Code in Python

Python                   11 repos            ███████████░░░░░░░░░░░░░░   44.00 % 
HTML                     7 repos             ███████░░░░░░░░░░░░░░░░░░   28.00 % 
Jupyter Notebook         2 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   08.00 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   04.00 % 
CSS                      1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   04.00 %

Last Updated on 21/07/2024 18:45:56 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 27 2

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 28 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 46 6