Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
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Updated
Jul 5, 2024 - Julia
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices
Finite State Projection algorithms for chemical reaction networks
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
Simulate evolutionary biology models with Gillespie algorithm.
Simplest simulation to use non-Exponential transitions
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