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DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays

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DelaySSAToolkit

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DelaySSAToolkit.jl is a tool developed on top of JumpProcesses.jl in Julia which solves the stochastic simulation [1] coupled with delays. A portion of this library’s code is taken from the MIT licensed JumpProcesses.jl library. That code is copyright (c) 2017: Chris Rackauckas. This package contains the following features:

Features

  • Various delay stochastic simulation algorithms are provided [2-6];
  • Stochastic delay type is supported;
  • Multiple delay channels and simultaneous delay reactions are supported;
  • A cascade of delay reactions is supported (a delay reaction that causes other delay reactions);
  • Priority queue and dependency graph are integrated for high computational performance;
  • Ecosystem with Catalyst.jl, JumpProcesses.jl, DifferentialEquations.jl and more...

More information is available in the documentation. Please feel free to open issues and submit pull requests!

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