Genomics workflows for CPG using Hail Batch
-
Updated
Jul 22, 2024 - Python
Genomics workflows for CPG using Hail Batch
zgtools-pipeline: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Earl Grey: A fully automated TE curation and annotation pipeline
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
a genomic interval search applied for faster search of the annotation
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
Genomic data manipulation tool
provides common tools and lookup tables used primarily by the hgvs and uta packages
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
non-redundant, compressed, journalled, file-based storage for biological sequences
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
a slint interface to the BIGG modeler database establishing all the links to the metanextx
a sql python class to prepare the genome files for the sqlite3
MAGset is a tool to analyze and compare MAGs of known species
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Repository for variant calling utilizing bioinformatics tools and databases
Illumina short read assembly data pipeline for phage
The genome of the contractile demosponge Tethya wilhelma
Add a description, image, and links to the genome-analysis topic page so that developers can more easily learn about it.
To associate your repository with the genome-analysis topic, visit your repo's landing page and select "manage topics."