Generate heatmap plots from genomic BigWig data

R code in R Markdown used for ucm genomes and genome analysis course

Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms

awk utilites for anlyzing pacbiohifi genomes and reads

fungal genome ITS coverage estimations.

bash based metagenomics otu plotter before analysis

a multipage golang application for seagrass health

A whole-genome reference database of soil bacteria, fungi, and archaea

C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.

Viral genome assemble and characterisation

Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5

GSEC - Genome Size Estimation using Coverage

This is a python implementation of understanding the genome of covid-19 and compare it with previously well known disease's genome

Ph.D. student from State Key Laboratory of Marine Environmental Science of XMU

Some snippet of code related to bioinformatics

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

extracting and analyzing interpro domains for domain based graphs

a langchain literature miner from pubmed

a metabolic json parser and streamlit for BIGG database

plotting and summary information tools for the mRNA proteome to genome alignments.