contamination
Here are 43 public repositories matching this topic...
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
-
Updated
Jul 14, 2024 - C
An open-source R package containing decontamination pipelines for low-biomass microbiome data
-
Updated
Jul 12, 2024 - R
A platform that enables users to perform private benchmarking of machine learning models. The platform facilitates the evaluation of models based on different trust levels between the model owners and the dataset owners.
-
Updated
Jul 1, 2024 - Python
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
-
Updated
Jun 6, 2024
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
-
Updated
May 21, 2024 - mupad
Escape if you can! A radiological event has occurred and you have to find your way out. Pick up items along the way that may help or harm you. When you've accumulate too much radiation it's game over.
-
Updated
May 17, 2024 - JavaScript
Tumour-in-Normal Contamination assessment with evolutionary theory.
-
Updated
Apr 25, 2024 - R
Godot educational game about oceans.
-
Updated
Apr 21, 2024 - GDScript
The LM Contamination Index is a manually created database of contamination evidences for LMs.
-
Updated
Apr 11, 2024 - Python
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
-
Updated
Apr 8, 2024 - Python
Remove human reads from a sequencing run
-
Updated
Jul 21, 2024 - Rust
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
-
Updated
Mar 27, 2024 - Python
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
-
Updated
Jul 9, 2024 - Python
Codes for a geoSpatial Decision Support Systems (S-DSS) for sustainable land use. Article published in Land Degradation & Development (2024)
-
Updated
Jan 10, 2024 - R
Analytical solutions for groundwater contaminant transport
-
Updated
Dec 15, 2023 - Julia
🗑️🦷 decOM 🦷🗑️
-
Updated
Nov 27, 2023 - Python
Shiny app for calculating & plotting data for UCL's and MK Trends
-
Updated
Nov 25, 2023 - HTML
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
-
Updated
Nov 6, 2023 - Perl
Improve this page
Add a description, image, and links to the contamination topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the contamination topic, visit your repo's landing page and select "manage topics."