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@caravagnalab

Caravagna Lab

The Cancer Data Science Laboratory at the University of Trieste, Italy. PI Giulio Caravagna.

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  1. revolver revolver Public

    REVOLVER - Repeated Evolution in Cancer

    R 64 25

  2. mobster mobster Public

    Model-based subclonal deconvolution from bulk sequencing.

    HTML 33 8

  3. CNAqc CNAqc Public

    CNAqc - Copy Number Alteration (CNA) Quality Check package

    R 17 8

  4. TINC TINC Public

    Tumour-in-Normal Contamination assessment with evolutionary theory.

    R 4 1

  5. VIBER VIBER Public

    VIBER - Variational Binomial Mixtures

    HTML 2 2

Repositories

Showing 10 of 35 repositories
  • tumourevo Public

    Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

    caravagnalab/tumourevo’s past year of commit activity
    1 GPL-3.0 2 9 0 Updated Nov 5, 2024
  • INCOMMON Public

    Inference of copy number and mutation multiplicity in oncology

    caravagnalab/INCOMMON’s past year of commit activity
    R 1 1 0 0 Updated Nov 5, 2024
  • bascule Public

    Detecting mutational signatures via bayesian inference and a reference catalog

    caravagnalab/bascule’s past year of commit activity
    R 1 GPL-3.0 1 1 0 Updated Nov 5, 2024
  • rRACES-examples Public
    caravagnalab/rRACES-examples’s past year of commit activity
    HTML 0 0 1 0 Updated Nov 5, 2024
  • rRACES Public

    R wrapper for the RACES package

    caravagnalab/rRACES’s past year of commit activity
    C++ 2 GPL-3.0 1 7 0 Updated Nov 5, 2024
  • rcongas Public

    rcongas

    caravagnalab/rcongas’s past year of commit activity
    R 7 GPL-3.0 1 3 (2 issues need help) 0 Updated Oct 31, 2024
  • CNAqc Public

    CNAqc - Copy Number Alteration (CNA) Quality Check package

    caravagnalab/CNAqc’s past year of commit activity
    R 17 GPL-3.0 8 3 0 Updated Oct 30, 2024
  • lineaGT Public

    Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations

    caravagnalab/lineaGT’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Oct 11, 2024
  • biPOD Public

    Bayesian inference for population dynamics

    caravagnalab/biPOD’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 10, 2024
  • TAPACLOTH Public
    caravagnalab/TAPACLOTH’s past year of commit activity
    0 0 0 0 Updated Sep 21, 2024
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