khyox / recentrifuge Star 86 Code Issues Pull requests Recentrifuge: robust comparative analysis and contamination removal for metagenomics nanopore ngs metagenomics comparative-genomics kraken contamination clark robustness centrifuge low-biomass lmat Updated Sep 25, 2024 Python
rachelgriffard / micRoclean Star 0 Code Issues Pull requests Discussions An open-source R package containing decontamination pipelines for low-biomass microbiome data metagenomics microbiome omics contamination low-biomass 16s-rrna contamination-filtering metagenomics-data decontamination Updated Sep 13, 2024 R