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clinical-nlp

Here are 30 public repositories matching this topic...

medspacy / medspacy

Library for clinical NLP with spaCy.

nlp pipeline spacy nlp-library clinical-nlp medspacy

Updated Oct 31, 2024
Jupyter Notebook

abachaa / MedQuAD

Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites

natural-language-processing question-answering medical-informatics clinical-nlp medical-nlp

Updated Oct 17, 2023

BIDS-Xu-Lab / Me-LLaMA

A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

llama medical-application biomedical-text-mining clinical-nlp medical- medical-question-answering gpt-4 large-language-models llm chatgpt biomedical-nlp llama2 medical-large-language-models

Updated Jun 24, 2024
Python

lindvalllab / clinicalXLNet

Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation

clinical-nlp xlnet pmv-prediction

Updated Aug 12, 2021
Python

NLPatVCU / multitasking_transformers

Multitask Learning with Pretrained Transformers

deep-learning bert multi-task-learning clinical-nlp

Updated Mar 20, 2021
Python

ritaranx / ClinGen

[ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models".

medical clinical-nlp synthetic-data-generation llm large-language-model mednli

Updated Jun 23, 2024
Python

AI-in-Health / Patient-Instructions

Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions" (NeurIPS 2022)

machine-learning knowledge-graph clinical-data retrieve neurips clinical-nlp neurips-2022

Updated Jul 28, 2024
Jupyter Notebook

kavgan / clinical-concepts

Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.

nlp paper clinical-notes terminologies graph-nlp clinical-concepts clinical-nlp concept-graph

Updated Jan 22, 2018

medspacy / sectionizer

A rule-based Python module for spitting documents into sections.

nlp pipeline spacy nlp-library clinical-nlp medspacy

Updated Nov 14, 2020
Jupyter Notebook

shaoxiongji / DCAN

Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text, ClinicalNLP workshop at EMNLP 2020

deep-neural-networks clinical-nlp icd-coding

Updated Aug 19, 2021
Python

asyml / ForteHealth

The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: https://casl-project.ai/

python machine-learning natural-language-processing information-retrieval deep-learning natural-language data-processing biomedical-named-entity-recognition clinical-text-processing clinical-nlp

Updated Mar 22, 2023
Python

umcu / dutch-medical-concepts

Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.

medical named-entity-recognition snomed dutch umls hpo named-entity-linking medical-natural-language-processing clinical-nlp medcat medical-text-mining

Updated Jan 20, 2023
Jupyter Notebook

kharrigian / ehr-stigma

Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)

ehr pretrained-models bias medical-records stigma clinical-nlp mimic-iv

Updated Jun 17, 2024
Python

cltl / a-proof-zonmw

Detecting the functioning level of a patient from a free-text clinical note in Dutch.

nlp dutch multi-label-classification electronic-health-records fine-tuning clinical-nlp regression-model simple-transformers who-icf

Updated Feb 2, 2022
Jupyter Notebook

medspacy / cycontext

A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework

nlp pipeline spacy nlp-library clinical-nlp medspacy

Updated Nov 13, 2020
Jupyter Notebook

ju-resplande / askD

AskDocs: A medical QA dataset

nlp qa clinical similarity sts english medical dataset question-answering semantic-similarity portuguese medical-natural-language-processing clinical-nlp

Updated Jun 29, 2022
Jupyter Notebook

ck37 / clinsent

Estimate sentiment in clinical notes via keywords or deep learning models

sentiment-analysis sentiment ehr clinical-notes clinical-nlp clinical-sentiment

Updated Sep 30, 2023
Python

crherlihy / clinical_nli_artifacts

MedNLI Is Not Immune: Natural Language Inference Artifacts in the Clinical Domain (ACL-IJCNLP '21)

clinical-notes mimic-iii natural-language-inference nlp-machine-learning clinical-nlp mednlp adversarial-filtering annotation-artifacts

Updated Aug 6, 2021
Python

medspacy / nlp_preprocessor

SpaCy component for modifying the string of a doc before tokenizing.

nlp pipeline spacy nlp-library clinical-nlp medspacy

Updated Oct 13, 2020
Python

xiaoyuxin1002 / bias_in_deid

In the Name of Fairness: Assessing the Bias in Clinical Record De-identification

named-entity-recognition bias fairness de-identification clinical-nlp

Updated Dec 17, 2023
Jupyter Notebook

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