A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework.
Development for cycontext has been moved to medSpaCy and should now be installed as:
pip install medspacy# Option 1: Load with a medspacy pipeline
import medspacy
nlp = medspacy.load()
print(nlp.pipe_names)
# Option 2: Manually add to a spaCy model
import spacy
from medspacy.context import ConTextComponent
nlp = spacy.load("en_core_web_sm")
nlp.add_pipe(ConTextComponent(nlp))
Please see the medSpaCy GitHub page for additional information and documentation.