Pipeline for simulating CCI dynamics across time
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Updated
Oct 26, 2022 - Jupyter Notebook
Pipeline for simulating CCI dynamics across time
Differential communication analysis for scRNAseq datasets based on expression products
scMLnet2.0: Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
20.440 Group Project-Intercellular Communication in vivo
This repo accompanies the Soelter et al., 2024 manuscript in Cell Communication and Signaling (BMC)
Investigate cell-cell signaling, by analyzing ligand-receptor interactions in spatial transcriptomic data
LIANA x Tensor-cell2cell Protocols
Infer cell-cell communications based on feed-forward neural network
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
Infer and visualize cell-cell communication for single-cell RNA-seq data
Source code for Liu, Y., Li, J. S. S., Rodiger, J., Comjean, A., Attrill, H., Antonazzo, G., ... & Perrimon, N. (2022). FlyPhoneDB: an integrated web-based resource for cell–cell communication prediction in Drosophila. Genetics, 220(3), iyab235.
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
Identifying external communication signals using single-cell transcriptomics data
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
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