Pipeline for simulating CCI dynamics across time
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Updated
Oct 26, 2022 - Jupyter Notebook
Pipeline for simulating CCI dynamics across time
Differential communication analysis for scRNAseq datasets based on expression products
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
Infer and visualize cell-cell communication for single-cell RNA-seq data
Infer cell-cell communications based on feed-forward neural network
This repo accompanies the Soelter et al., 2024 manuscript in Cell Communication and Signaling (BMC)
scMLnet2.0: Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
20.440 Group Project-Intercellular Communication in vivo
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
Investigate cell-cell signaling, by analyzing ligand-receptor interactions in spatial transcriptomic data
Identifying external communication signals using single-cell transcriptomics data
ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
LIANA x Tensor-cell2cell Protocols
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
Spatial direct messaging detected by bivariate Moran
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
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