EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

integrated RNA-seq Analysis Pipeline

a fully Bayesian approach to deconvolve tumor microenvironment

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

a web-based R shiny application that wraps DESeq2 R package

"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

DecoFlex deconvolution method for Omic data implemented as DecoFlexR

CATD: Critical Assessment of Transcriptomics Deconvolution

Normalizing RNA-Seq Data

Multi-subject Single Cell Deconvolution

Workshop materials for the U-BDS bulk RNA-seq lessons

SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.

This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.