Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
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Updated
Sep 17, 2024 - Shell
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Shell script to sort .gtf files
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
a sequence analysis workflow for low-input nanopore sequencing
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
Common BASH routines for computational biology
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
script to perform amplicon sequencing analysis for Norovirus genotypes and variants
Toolbox for comparative genomics
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