Antibiotic Resistance in Metagenomes
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Updated
Oct 10, 2017 - Python
Antibiotic Resistance in Metagenomes
Pipeline for analysing M. tuberculosis nanopore reads and getting drug susceptibility information.
A snakemake workflow wrapping various phage host prediction tools
bacterial strain identification
PCA on Genotypes
A simple job manager for PBS (Portable Batch System)
ChIPseq pipeline for Pasini's lab written in snakemake
Track fundamental frequencies of multiple wave-type electric fish on electrode grid recordings
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
CutNtag pipeline for Pasini's lab written in snakemake
Pipeline to make pairwise comparisons of matched fasta sequences.
Snakemake pipeline for meta-analysis of functional screening data
VIOS repository's docker deployment version. Refer to the result on DockerHub.
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
A snakemake pipeline for tick determination from ONT whole genome sequencing samples.
In this project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.
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