Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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Updated
Jun 15, 2024 - Java
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
ASAP : Automated Single-cell Analysis Pipeline
Workflow management system for the automated and distributed analysis of large-scale experimental data.
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
This package contains the BLAST Viewer Tool.
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
Decision-driven action launching system
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
The power of the R's differential gene expression analysis packages, with no programming required.
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Detect the presence of specific resistance genes in a sample using the IRIDA system
Spring Batch and biological data
Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com
Determine the sequence type of specific transposable elements in bacterial isolates.
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
Human RNA virus genotyping
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