A single-cell RNAseq pipeline for 10X genomics data
workflow
rna-seq
pipeline
nextflow
single-cell
kallisto
10x-genomics
10xgenomics
nf-core
bustools
alevin
cellranger
star-solo
-
Updated
Aug 21, 2024 - Nextflow
A single-cell RNAseq pipeline for 10X genomics data
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
De novo assembly pipeline for 10X linked-reads using Supernova
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