Library code for programming contests

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

A comprehensive library for computational molecular biology

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

A natural language interface for computers

Error correction of ONT transcript reads

gia: Genomic Interval Arithmetic

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

an API for intersections of genomic data

A list of software for pangenomics

Tensor library for machine learning

Python package built to ease deep learning on graph, on top of existing DL frameworks.

📊 Circular and Rectangular Manhattan Plot

Fast and Accurate ML in 3 Lines of Code

GENA-LM is a transformer masked language model trained on human DNA sequence.

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps

An open-source R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphic…

Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

Inference Llama 2 in one file of pure C