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Refactor/restructure directories (#150)
* refactor: rename folder embedded -> src * chore(git): merge src/.gitignore with root .gitignore * refactor(vscode): move src/.vscode to .vscode * chore(vscode): update include paths * refactor: move .svd files to new /debug folder * chore(vscode): hide .mxproject files from file explorer * refactor: move Makefile to repo root * build: update Makefile paths for new directory structure * refactor: move src/Scripts to /scripts folder * chore(vscode): update script paths * chore(trunk): update source paths * build: update paths in compile commands generation script
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