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Issues: sqjin/CellChat

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Issues list

Error in aggregate.data.frame(as.data.frame(x) (computeCommunProb(cellchat))
#525 opened Dec 15, 2022 by DRSEI updated Nov 20, 2023
CellChat2 computeCommunProb error
#727 opened Nov 21, 2023 by kcavagnero updated Nov 21, 2023
1
CellChat on Integrated Seurat Data
#613 opened May 8, 2023 by me-orlov updated Nov 22, 2023
4
Differential expression analysis reports same pair L-R as both downregulated and upregulated ???
#403 opened Apr 8, 2022 by giovanegt updated Nov 22, 2023
2
Seemingly incorrect differential analysis
#342 opened Dec 21, 2021 by GBeattie updated Nov 22, 2023
19
error reporting for rankSimilarity
#259 opened Aug 7, 2021 by zh-zhang1984 updated Nov 24, 2023
8
using cellchat with Xenium data
#652 opened Jul 26, 2023 by GhobrialMoheb updated Nov 25, 2023
3
How can I performe cellchat in a Seurat v5 object?
#728 opened Nov 29, 2023 by carlosccfraga updated Nov 29, 2023
Error in visualizing chord diagram
#235 opened Jun 28, 2021 by jojob123 updated Dec 1, 2023
13
netVisual_diffInteraction for specific cell target, Error in i_set_edge_attr(x, attr(value, "name"), index = value, value = attr(value, : Length of new attribute value must be 1 or 25, the number of target edges, not 7
#705 opened Oct 3, 2023 by rfreeman7 updated Dec 1, 2023
4
missing pathways
#656 opened Aug 3, 2023 by Imm123 updated Dec 4, 2023
5
scale.factors with colnames ratio and tol should be provided!
#729 opened Dec 1, 2023 by QianChwnLyn updated Dec 4, 2023
1
comparing dataset error in netAnalysis_signalingChanges_scatter
#730 opened Dec 4, 2023 by Leob44 updated Dec 4, 2023
1
Error netVisual_heatmap() on a merged object from Seurat
#732 opened Dec 11, 2023 by molybdenumt updated Dec 11, 2023
netAnalysis_signalingRole_network cluster.cols and cluster.rows not working
#733 opened Dec 12, 2023 by Gabbbbbbb updated Dec 16, 2023
1
error with identifyOverExpressedGenes(cellchat)
#734 opened Dec 13, 2023 by sanskritidey updated Dec 16, 2023
1
createCellChat：in match.arg(datatype) : 'arg' must be NULL or a character vector
#663 opened Aug 9, 2023 by haobeny updated Dec 20, 2023
4
Missing Column annotation in LRsig after merge cellchat and celltalk L-R pair
#737 opened Dec 28, 2023 by wuy33 updated Dec 28, 2023
unable to start device 'png' in save the plots of the all inferred network
#638 opened Jun 16, 2023 by DelongZHOU updated Dec 29, 2023
2
NetP empty after running computeCommunProb
#736 opened Dec 19, 2023 by Dena2021 updated Dec 29, 2023
1
A problem with a error message in identifyOverExpressedGenes in CellChat. bug Something isn't working
#264 opened Aug 11, 2021 by weichloe updated Dec 29, 2023
9
parameter "group.by" in subsetCellChat doesn't work
#738 opened Dec 29, 2023 by ttrrtttrrt updated Dec 29, 2023
Why haven't we utilized single-cell proteomics for cell communication recognition and prediction?
#740 opened Jan 3, 2024 by YuzhiSun updated Jan 4, 2024
1
Issue with installing CellChat package in R studio
#739 opened Dec 29, 2023 by Navya156 updated Jan 4, 2024
1
Error in createCellChat object
#742 opened Jan 7, 2024 by TZUwang updated Jan 7, 2024
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