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Linter rules for Nextflow DSL scripts
Configure workflow/pipeline tests using yaml files.
Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli
Python library and Command Line Interface for interacting with Lifebit Applications
Simple command-line utility to convert CSV files to searchable and sortable HTML table.
Specifications of SAM/BAM and related high-throughput sequencing file formats
CGAT-ruffus is a lightweight python module for running computational pipelines
A ggplot2 geom for adding Bernie Sanders to ggplot2
Short lessons from FAS Informatics coffee hour
Repository for the GA4GH phenopacket schema
Source code and related materials for the O'Reilly book
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Jos…
An interactive explorer for single-cell transcriptomics data
💌 Create simple, beautiful personal websites and landing pages using only R Markdown.
ripgrep recursively searches directories for a regex pattern while respecting your gitignore
A fast CSV command line toolkit written in Rust.
Build and maintain multiple custom conda environments all in one place.
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
A mini (dumb) nextflow pipeline to test pipeline failures in general
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms