Linter rules for Nextflow DSL scripts

Configure workflow/pipeline tests using yaml files.

Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli

Python library and Command Line Interface for interacting with Lifebit Applications

Personal Cancer Genome Reporter (PCGR)

Simple command-line utility to convert CSV files to searchable and sortable HTML table.

Specifications of SAM/BAM and related high-throughput sequencing file formats

CGAT-ruffus is a lightweight python module for running computational pipelines

A ggplot2 geom for adding Bernie Sanders to ggplot2

Short lessons from FAS Informatics coffee hour

a small .pdf management tool with a command-line UI

Repository for the GA4GH phenopacket schema

Source code and related materials for the O'Reilly book

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Jos…

An interactive explorer for single-cell transcriptomics data

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

Find clustered hits from a BLAST search

Gene cluster comparison figure generator

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

A fast CSV command line toolkit written in Rust.

Build and maintain multiple custom conda environments all in one place.

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

A mini (dumb) nextflow pipeline to test pipeline failures in general

The D4 Quantitative Data Format

The command-line interface to GGD

conda recipes for genomic data

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Tools to work with variant call format files