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- @sangram_ksahu
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bactmap Public
Forked from nf-core/bactmapA mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Nextflow MIT License UpdatedMar 27, 2024 -
blog Public
Blogging site hosted on Netlify (https://sksahu-blog.netlify.com)
HTML UpdatedFeb 21, 2024 -
Snakeflows Public
Collective Snakemake workflows for easy and reproducible NGS data analysis.
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the-turing-way Public
Forked from the-turing-way/the-turing-wayHost repository for The Turing Way: a how to guide for reproducible data science
TeX Other UpdatedJun 22, 2022 -
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sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
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sig-bio-shiny Public
A standalone interactive application for detecting biological significance on a set of genes
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code Public
Ready to use Gitpod/VScode IDE with Prebuilt Dev Environment
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scrnaseq Public
Forked from nf-core/scrnaseqA single-cell RNAseq pipeline for 10X genomics data
Nextflow MIT License UpdatedMar 24, 2021 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedMar 11, 2021 -
rnadeseq Public
Forked from qbic-pipelines/rnadeseqDifferential gene expression analysis and pathway analysis of RNAseq data
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rnaseq-nf Public
Forked from nextflow-io/rnaseq-nfA proof of concept of RNAseq pipeline
Nextflow Mozilla Public License 2.0 UpdatedFeb 2, 2021 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedJan 29, 2021 -
multi-omics-state-of-the-field Public
Forked from krassowski/multi-omics-state-of-the-fieldAnalyses for "State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing"
Jupyter Notebook MIT License UpdatedNov 13, 2020 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 9, 2020 -
streamlit-example Public
Forked from streamlit/streamlit-exampleExample Streamlit app that you can fork to test out share.streamlit.io
Python UpdatedNov 3, 2020 -
PGRB Public
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
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snakemake-wrappers Public
Forked from snakemake/snakemake-wrappersThis is the development home of the Snakemake wrapper repository, see
Perl UpdatedJun 25, 2020 -
mamba Public
docker image for mamba - https://github.com/QuantStack/mamba
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EcoGEx Public
Arabidopsis EcoGEx (R-📦 + 🕸️-App)
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learn-python Public
This repository host a binder instance with few libraries installed for teaching purpose
Jupyter Notebook UpdatedFeb 28, 2020 -
runner Public
Ready to use Running R Instances (Run-R == RunneR)
Jupyter Notebook UpdatedFeb 24, 2020 -
bioconductor_docker_shiny Public
Bioconductor docker image with Shiny Server.
Dockerfile UpdatedFeb 21, 2020