Work with bioinformatic files using Arrow, Polars, and/or DuckDB

HoloViz+Bokeh for Neuroscience

🎀 Awesome Zarr resources

Listing of papers about machine learning for proteins.

An open source web application for building, managing, and playtesting Magic the Gathering cubes.

Rust implementation of ekg's dozyg

Optimal sequence-to-graph alignment with recombinations

Speaker Diarization with Transformers

Read specialized NGS formats as data frames in R, Python, and more.

Scheduler for sub-node tasks for HPC systems with batch scheduling

Segment Anything for Microscopy

Run ruff, isort, pyupgrade, mypy, pylint, flake8, and more on Jupyter Notebooks

Fast and Versatile Alignments for Python

Web and server implementation of a popular Chinese card game

Fast and automatic structural identifiability software for ODE systems

Webserver and command line tool for annotating engineered plasmids

Nanopore Plasmid Sequencing

Break the linear presentation of Jupyter Notebooks with sticky cells!

Accurate segmentation of bacterial microscope images using synthetically generated image data.

Manipulate JSON-like data with NumPy-like idioms.

Julia bindings for the Enzyme automatic differentiator

High-performance automatic differentiation of LLVM and MLIR.

Molecular simulation in Julia

Next-generation AD

learning state-space targets in dynamical systems

Julia binding for Apache Spark

Official Julia implementation of Apache Arrow

Simple, modern and fast file watching and code reload in python.

Functions generated at runtime without world-age issues or overhead