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Issues list

Issue with dplyr::standardise_join_by() with get_abundance_expression_info
#15 by khain2650 was closed Jul 31, 2023
1
Nichenet v2 networks and matrices compatibility with nichenetr pipeline
#3 by ultimatex5 was closed Apr 14, 2022
1
senders and receivers selection for input multinichenet wrapper function
#4 by browaeysrobin was closed Jun 9, 2022
issue with filtering of genes before DE analysis
#5 by browaeysrobin was closed Jun 9, 2022
Unable to install multinichenetr
#6 by Sphiltje was closed Aug 4, 2023
3
Error when running get_DE_info()
#7 by VivianQM was closed Jul 7, 2023
30
NAs in "target" and "ligand_target_weighted" columns ligand_activities_targets_DEgenes$ligand_activities dataframe
#8 by browaeysrobin was closed Jul 7, 2023
1
How should I set the contrast table
#9 by ziyangliu93 was closed Jul 14, 2023
5
Error calling graph_plot$plot bug Something isn't working
#10 by SergioRodLla was closed Oct 26, 2023
8
Error in dplyr::inner_join(): Problem with ligand and target. enhancement New feature or request
#11 by catsargent was closed Aug 4, 2023
2
Error in auto_copy(): Set copy = TRUE if y can be copied to the same source as x (may be slow).
#12 by catsargent was closed Aug 7, 2023
1
Are logcounts required in sce object?
#13 by catsargent was closed Aug 7, 2023
5
Vignettes not up-to-date
#1 by browaeysrobin was closed Mar 17, 2022
abundance_expression_info contains empty dfs
#14 by avdl25 was closed Jul 25, 2023
1
Error !is.null(pbs[["group_id"]]) is not TRUE
#16 by carolinemorrell was closed Aug 8, 2023
14
Error: not enough samples when there are
#17 by lo2811 was closed Aug 21, 2023
5
Error with cell type names containing spaces
#18 by koelschnj was closed Aug 7, 2023
1
Bug get_DE_info when option findMarkers = TRUE bug Something isn't working
#19 by browaeysrobin was closed Oct 27, 2023
1
Error in UseMethod("inner_join") when running make_lite_output
#21 by catsargent was closed Aug 18, 2023
1
No results returned when running get_top_n_lr_pairs
#22 by catsargent was closed Aug 18, 2023
2
All values in fraction_expressing_ligand_receptor column in prioritization_table_oi are 0 bug Something isn't working
#23 by catsargent was closed Aug 23, 2023
6
Warning when running lr_target_prior_cor_inference()
#24 by VivianQM was closed Aug 21, 2023
6
contrast table for 4 groups enhancement New feature or request
#25 by lw157 was closed Aug 29, 2023
4
Setting multiple covariates and batches in multinichnet
#26 by iichelhadi was closed Aug 29, 2023
2
Difference in results between the step by step vignette and multi_nichenet_analysis
#87 by APuchkina was closed Aug 20, 2024
1
ProTip! Adding no:label will show everything without a label.