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scHGR Public
Forked from MengyuanZhaoo/scHGRAn automated cell identity annotation tool, termed single-cell Hybrid graph neural network with Gene Regulations (scHGR)
Python UpdatedAug 2, 2024 -
scELMo Public
Forked from HelloWorldLTY/scELMoCodes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
Jupyter Notebook UpdatedAug 2, 2024 -
escape Public
Forked from ncborcherding/escapeEasy single cell analysis platform for enrichment
R MIT License UpdatedAug 2, 2024 -
irGSEA Public
Forked from chuiqin/irGSEAThe integration of single cell rank-based gene set enrichment analysis
R Other UpdatedJul 23, 2024 -
cellxgene Public
Forked from chanzuckerberg/cellxgeneAn interactive explorer for single-cell transcriptomics data
JavaScript MIT License UpdatedJul 19, 2024 -
HuMMuS Public
Forked from cantinilab/HuMMuSMolecular interactions inference from single-cell multi-omics data
Python GNU Affero General Public License v3.0 UpdatedJul 16, 2024 -
rapids_singlecell Public
Forked from scverse/rapids_singlecellRapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
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GseaVis Public
Forked from junjunlab/GseaVisAn implement R package to visualize GSEA results
R Other UpdatedJul 9, 2024 -
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EvoBind Public
Forked from patrickbryant1/EvoBindIn silico directed evolution of peptide binders with AlphaFold
Jupyter Notebook UpdatedJun 27, 2024 -
cell2cell Public
Forked from earmingol/cell2cellUser-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 14, 2024 -
scRNA-seq_notes Public
Forked from mdozmorov/scRNA-seq_notesA list of scRNA-seq analysis tools
R MIT License UpdatedJun 9, 2024 -
mne-python Public
Forked from mne-tools/mne-pythonMNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 7, 2024 -
scFoundation Public
Forked from biomap-research/scFoundation -
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
R MIT License UpdatedJun 4, 2024 -
uwot Public
Forked from jlmelville/uwotAn R package implementing the UMAP dimensionality reduction method.
R GNU General Public License v3.0 UpdatedMay 18, 2024 -
MAGMA_Celltyping Public
Forked from neurogenomics/MAGMA_CelltypingFind causal cell-types underlying complex trait genetics
R UpdatedMay 17, 2024 -
scenicplus Public
Forked from aertslab/scenicplusSCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Jupyter Notebook Other UpdatedMay 13, 2024 -
GWalkR Public
Forked from Kanaries/GWalkRTurn your data frame into a tableau style drag and drop UI interface to build visualization in R.
TypeScript Apache License 2.0 UpdatedApr 12, 2024 -
scRNA-cell-cell-communication-analysis Public
Forked from hamidghaedi/scRNA-cell-cell-communication-analysisA repo on cell-cell interaction inference in scRNA dataset
R UpdatedMar 15, 2024 -
liana Public
Forked from saezlab/lianaLIANA: a LIgand-receptor ANalysis frAmework
R GNU General Public License v3.0 UpdatedFeb 28, 2024 -
scFlow Public
Forked from neurogenomics/scFlowSingle-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
R Other UpdatedFeb 21, 2024 -
memos Public
Forked from usememos/memosAn open source, lightweight note-taking service. Easily capture and share your great thoughts.
Go MIT License UpdatedFeb 6, 2024 -
CellChat Public
Forked from sqjin/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R GNU General Public License v3.0 UpdatedJan 6, 2024 -
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SCP Public
Forked from zhanghao-njmu/SCPSCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
R GNU General Public License v3.0 UpdatedAug 30, 2023 -
pulsar Public
Forked from pulsar-edit/pulsarA Community-led Hyper-Hackable Text Editor
JavaScript Other UpdatedAug 4, 2023 -
devops-exercises Public
Forked from bregman-arie/devops-exercisesLinux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions
Python Other UpdatedAug 3, 2023 -
single-cell-pseudotime Public
Forked from agitter/single-cell-pseudotimeAn overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Creative Commons Attribution 4.0 International UpdatedJul 30, 2023