Large Language Model based Multi-Agents: A Survey of Progress and Challenges

A diffusion model to colorize black and white images

LLM Finetuning with peft

论文里可以用到的实验图示例

A project to extract CRISPR information from open genetic data.

List of software/websites/databases/other stuff for genome engineering

Open source code for CRISPRimmunity

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Awesome Protein Representation Learning

A resource for researchers studying TCR antigen specificity

Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion

Epitope Prediction Pipeline and analysis tools built around AlphaFold 2

Elucidating the Design Space of Diffusion-Based Generative Models (EDM)

Dataset and package for working with protein-protein interactions in 3D

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

Implementation of the algorithm detailed in paper "Evolutionary design of molecules based on deep learning and a genetic algorithm"

Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding

Bilingual Language Model for Protein Sequence and Structure

[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet

This repository implements Gibbs sampling with Graph-based Smoothing

A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.

Practical Cheminformatics Tutorials

Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)

MLNLP社区用来帮助大家避免论文投稿小错误的整理仓库。 Paper Writing Tips

A library for graph deep learning research

TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.