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@phac-nml

National Microbiology Laboratory

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  1. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 113 26

  2. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 112 31

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 46 10

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 3

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 25 7

Repositories

Showing 10 of 137 repositories
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 2 16 7 Updated Jul 30, 2024
  • ecoli_serotyping Public

    In silico prediction of E. coli serotype

    phac-nml/ecoli_serotyping’s past year of commit activity
    Python 46 Apache-2.0 10 9 2 Updated Jul 30, 2024
  • phac-nml/arborator’s past year of commit activity
    Python 2 Apache-2.0 0 4 0 Updated Jul 30, 2024
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 10 MIT 2 9 2 Updated Jul 30, 2024
  • pipeline-standards Public

    Guidelines for developing Nextflow pipelines for IRIDA Next.

    phac-nml/pipeline-standards’s past year of commit activity
    2 Apache-2.0 1 7 1 Updated Jul 29, 2024
  • locidex Public

    Common search engine for similarity based typing applications

    phac-nml/locidex’s past year of commit activity
    Python 2 MIT 0 11 0 Updated Jul 29, 2024
  • clustersplitter Public

    EPS suite Arborator pipeline

    phac-nml/clustersplitter’s past year of commit activity
    HTML 0 MIT 0 1 1 Updated Jul 29, 2024
  • pangonet Public

    Create and manipulate SARS-CoV-2 pango lineages in a phylogenetic network.

    phac-nml/pangonet’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 26, 2024
  • staramrnf Public

    nf-core StarAMR

    phac-nml/staramrnf’s past year of commit activity
    Nextflow 0 MIT 0 5 2 Updated Jul 26, 2024
  • go-cluster Public

    A utility for fast-matching and clustering.

    phac-nml/go-cluster’s past year of commit activity
    Go 1 0 0 0 Updated Jul 26, 2024

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