Stars
Efficiently read and write sequencing data from Python
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
nextflow-io / nf-schema
Forked from nextflow-io/nf-validationFunctionality for working with pipeline and sample sheet schema files in Nextflow pipelines
This repository hosts a large collection of Nextflow snippets
Compatibility tool for Steam Play based on Wine and additional components
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Static recompilation of Majora's Mask (and soon Ocarina of Time) for PC (Windows/Linux)
A static site generator for data apps, dashboards, reports, and more. Observable Framework combines JavaScript on the front-end for interactive graphics with any language on the back-end for data a…
A concise API for exploratory data visualization implementing a layered grammar of graphics
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
fast, multithreaded sourmash operations: search, compare, and gather.
An extremely fast Python package and project manager, written in Rust.
Streamlit — A faster way to build and share data apps.
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Making Protein folding accessible to all!
HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors