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nf-flu Public
Influenza genome analysis Nextflow workflow
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DeepIRES Public
Forked from SongLab-at-NUAA/DeepIRESInternal ribosomal entry site prediction by deep-learning model
Python MIT License UpdatedSep 17, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 11, 2024 -
pharokka and phold annotation of ASFV genome NC_044954.1
Jupyter Notebook UpdatedMay 7, 2024 -
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cobra Public
Forked from linxingchen/cobraA tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
Python MIT License UpdatedMar 8, 2024 -
xlavir Public
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows
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TreeOrdination Public
Forked from jrudar/TreeOrdinationCreating and analyzing projections created from decision tree ensembles.
Python MIT License UpdatedMay 12, 2023 -
LANDMark Public
Forked from jrudar/LANDMarkImplementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.
Python MIT License UpdatedMay 12, 2023 -
runscanner Public
Forked from miso-lims/runscannerMonitors directories on the file system containing the output from sequencing instruments (e.g. Illumina) and reports their status and metrics
Java GNU General Public License v3.0 UpdatedFeb 24, 2023 -
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blast2xl Public
BLAST XLSX Report Creator and Sequence Sorter
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guppywuppy Public
Basic service wrapping PyGuppyClient talking to fast5watch
Python MIT License UpdatedDec 26, 2022 -
vcf_consensus_builder Public
Build a consensus sequence from a VCF and reference sequence masking low and no coverage positions
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filter_classified_reads Public
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
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sublime-nextflow Public
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
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aodp Public
Automated Oligonucleotide Design Pipeline (AODP) from https://bitbucket.org/wenchen_aafc/aodp_v2.0_release/
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on_deer_spillback_analyses Public
Forked from fmaguire/on_deer_spillback_analysesHTML UpdatedSep 15, 2022 -
nf-villumina Public
Generic viral Illumina sequence analysis pipeline
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fasta2lmdb Public
Quickly save FASTA sequences to an LMDB key-value database for rapid retrieval.
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longshot Public
Forked from pjedge/longshotdiploid SNV caller for error-prone reads
Rust MIT License UpdatedOct 12, 2021 -
nf-illmap Public
Nextflow workflow for Illumina read mapping, variant calling and consensus sequence generation using Snippy
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bertax Public
Forked from rnajena/bertaxTaxonomic classification of DNA sequences
Python UpdatedAug 30, 2021 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedJul 26, 2021 -
nf-core-tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedJul 8, 2021 -
package_control_channel Public
Forked from wbond/package_control_channelDefault channel file for Package Control. Follow the directions at:
Python UpdatedJul 1, 2021 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJul 1, 2021 -
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miso-lims Public
Forked from miso-lims/miso-limsMISO: An open-source LIMS for NGS sequencing centres
Java GNU General Public License v3.0 UpdatedJun 7, 2021
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