Pretty good call graphs for dynamic languages

Comprehensive Python Cheatsheet

Ready-to-run Docker images containing Jupyter applications

nucleic acid folding

https://django-storages.readthedocs.io/

DNA plotting library for Python

Implementation of hashids (http:https://hashids.org) in Python. Compatible with Python 2 and Python 3

Full stack, modern web application template. Using FastAPI, React, SQLModel, PostgreSQL, Docker, GitHub Actions, automatic HTTPS and more.

RNA-Seq analysis workflow

COVID-19 Italia - Monitoraggio situazione

ReFramed: metabolic modeling package

Rmd source files for the HarvardX series PH525x

SWIG-Python wrappers implementing SBOL 2.2

An open-source, Web-based computer aided design (CAD) tool for synthetic biology built on the SBOL standard

PCAtools: everything Principal Components Analysis

A Python implementation of the R package GeoDE

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

This repository provide tutorials regarding using Plotly offline package in python.

A Python Wrapper for the Inform Information Analysis Library

A cross platform C library for information analysis of dynamical systems

Incubator for useful bioinformatics code, primarily in Python and R

GFF and GTF file manipulation and interconversion

Scripts and results from omics-based methods assessment paper in PLoS Comp Bio 2014

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing

This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

cameo - computer aided metabolic engineering & optimization

ModelSEED UI (beta)