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GeoDEpy

A Python implementation of the R package GeoDE (http:https://cran.r-project.org/web/packages/GeoDE/index.html)

Installation

$ pip install git+https://github.com/Maayanlab/geode.git

Introduction

A geometrical Approach to Differential expression and gene-set enrichment.

Given expression data this package calculate a multivariate geometrical characterization of the differential expression and can also perform gene-set enrichment.

Dependency

These functions is dependent on Numpy(http:https://www.numpy.org/) and Scikit-learn(http:https://scikit-learn.org/stable/)

References

http:https://www.biomedcentral.com/1471-2105/15/79

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A Python implementation of the R package GeoDE

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